Variant Motif Visualization Tool: vmvt¶
vmvt is a modern Java (version 11 and above) library for creating SVG plots to represent splice variants. It can be used as a library or as a standalone app.
Quick Example¶
The following snippet will create a splice donor Sequence Walker (for details, see Sequence walkers).
import org.monarchinitiative.vmvt.core; VmvtGenerator vmvt = new VmvtGenerator(); // create a Splice Donor sequence logo String logoSvg = vmvt.getDonorLogoSvg(); // create a sequence walker showing the effects of a variant final String ref = "AAGGTCAGA"; final String alt = "AAGATCAGA"; String walkerSvg = vmvt.getDonorWalkerSvg(ref,alt);
Feedback¶
The best place to leave feedback, ask questions, and report bugs is the vmvt Issue Tracker.